gnu: Add r-xcms.
* gnu/packages/bioconductor.scm (r-xcms): New variable.
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@ -4004,3 +4004,39 @@ genes.")
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data mainly through the use of wavelet transforms. It supports peak detection
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based on @dfn{Continuous Wavelet Transform} (CWT).")
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(license license:lgpl2.0+)))
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(define-public r-xcms
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(package
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(name "r-xcms")
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(version "3.4.4")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "xcms" version))
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(sha256
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(base32
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"073f25m7y8z4560k93d99fv72pr7nrgrp054zssi7jhas4l3ddww"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-lattice" ,r-lattice)
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("r-massspecwavelet" ,r-massspecwavelet)
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("r-msnbase" ,r-msnbase)
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("r-multtest" ,r-multtest)
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("r-mzr" ,r-mzr)
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("r-plyr" ,r-plyr)
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("r-protgenerics" ,r-protgenerics)
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("r-rann" ,r-rann)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-robustbase" ,r-robustbase)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/xcms/")
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(synopsis "LC/MS and GC/MS mass spectrometry data analysis")
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(description
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"This package provides a framework for processing and visualization of
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chromatographically separated and single-spectra mass spectral data. It
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imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. It preprocesses
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data for high-throughput, untargeted analyte profiling.")
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(license license:gpl2+)))
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