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gnu: r-nmf: Move from "annotation" to "package" section.

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* gnu/packages/bioconductor.scm (r-nmf): Move variable.
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Ricardo Wurmus 2020-12-17 11:41:15 +01:00
parent eb3c105126
commit 17235ec28c
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1 changed files with 45 additions and 45 deletions
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90
gnu/packages/bioconductor.scm
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@ -748,51 +748,6 @@ annotations.")
"This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0)))
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf
(package
(name "r-nmf")
(version "0.23.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "NMF" version))
(sha256
(base32
"0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"))))
(properties `((upstream-name . "NMF")))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-biobase" ,r-biobase)
("r-biocmanager" ,r-biocmanager)
("r-bigmemory" ,r-bigmemory) ; suggested
("r-synchronicity" ,r-synchronicity) ; suggested
("r-colorspace" ,r-colorspace)
("r-digest" ,r-digest)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-gridbase" ,r-gridbase)
("r-pkgmaker" ,r-pkgmaker)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-registry" ,r-registry)
("r-reshape2" ,r-reshape2)
("r-rngtools" ,r-rngtools)
("r-stringr" ,r-stringr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "http://renozao.github.io/NMF")
(synopsis "Algorithms and framework for nonnegative matrix factorization")
(description
"This package provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published
algorithms and seeding methods, and provides a framework to test, develop and
plug new or custom algorithms. Most of the built-in algorithms have been
optimized in C++, and the main interface function provides an easy way of
performing parallel computations on multicore machines.")
(license license:gpl2+)))
(define-public r-do-db
(package
(name "r-do-db")
@ -1289,6 +1244,51 @@ the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf
(package
(name "r-nmf")
(version "0.23.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "NMF" version))
(sha256
(base32
"0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"))))
(properties `((upstream-name . "NMF")))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-biobase" ,r-biobase)
("r-biocmanager" ,r-biocmanager)
("r-bigmemory" ,r-bigmemory) ; suggested
("r-synchronicity" ,r-synchronicity) ; suggested
("r-colorspace" ,r-colorspace)
("r-digest" ,r-digest)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-gridbase" ,r-gridbase)
("r-pkgmaker" ,r-pkgmaker)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-registry" ,r-registry)
("r-reshape2" ,r-reshape2)
("r-rngtools" ,r-rngtools)
("r-stringr" ,r-stringr)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "http://renozao.github.io/NMF")
(synopsis "Algorithms and framework for nonnegative matrix factorization")
(description
"This package provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published
algorithms and seeding methods, and provides a framework to test, develop and
plug new or custom algorithms. Most of the built-in algorithms have been
optimized in C++, and the main interface function provides an easy way of
performing parallel computations on multicore machines.")
(license license:gpl2+)))
(define-public r-affycomp
(package
(name "r-affycomp")